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Job:
Postdoc on integrating and analyzing new transcriptome types in the Bgee database
rnaseq
data integration
single-cell
pacbio
across species
Job
6.2 years ago
bgee
• 0
5
votes
15
replies
5.0k
views
Cross-species RNA-seq with DESeq2
deseq2
rnaseq
across species
updated 11 months ago by
James W. MacDonald
65k • written 6.9 years ago by
vtartaglio
▴ 10
1
vote
12
replies
3.4k
views
Using GOsemsim to calculate semantic similarity between orthologus genes of two species
GOsemsim
Gene ontology
semantic similarity
across species
updated 7.4 years ago by
Guangchuang Yu
★ 1.2k • written 7.4 years ago by
saadmurtazakhan
▴ 10
0
votes
7
replies
2.5k
views
Error reading kallisto files using tximport for cross species RNA-Seq analysis
kallisto
tximport
RNA-Seq
across species
updated 2.5 years ago by
nicolette.sipperly
• 0 • written 7.0 years ago by
urjaswita
▴ 40
0
votes
1
reply
747
views
DESeq2 modeling different organisms as batch effects
deseq2
batch effect
across species
updated 5.4 years ago by
Michael Love
42k • written 5.4 years ago by
mjldehoon
• 0
2
votes
1
reply
1.1k
views
Cross-species analysis and normalization with DESeq2
normalization
deseq2
across species
rnaseq
updated 4.0 years ago by
Michael Love
42k • written 4.0 years ago by
rmurray2050
• 0
6 results • Page
1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network()
by
ninidea
• 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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